Identified secondary metabolite clusters

Cluster Type From To
The following clusters are from record AM746336.1:
Cluster 1Transatpks-nrps-t1pks11022132542

Cluster 1 - Transatpks-nrps-t1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
() + (gly) + (mmal-mal) + (gly) + (mal-mal) + (mmal) + (thr-ser) + (val) + (nrp) + (arg)
kirAIII
NRPSPredictor2 SVM: gly
Stachelhaus code: gly
Minowa: gly
consensus: gly

kirAVI
PKS signature: mmal
Minowa: mmal
consensus: mmal

PKS signature: mal
Minowa: mal
consensus: mal

kirB
NRPSPredictor2 SVM: gly
Stachelhaus code: gly
Minowa: gly
consensus: gly

kirCI
PKS signature: mal
Minowa: mal
consensus: mal

PKS signature: mal
Minowa: mal
consensus: mal

kirCII
PKS signature: mmal
Minowa: mmal
consensus: mmal

orf_R1
NRPSPredictor2 SVM: thr
Stachelhaus code: thr
Minowa: thr
consensus: thr

NRPSPredictor2 SVM: ser
Stachelhaus code: ser
Minowa: ser
consensus: ser

orf_R7
NRPSPredictor2 SVM: val
Stachelhaus code: val
Minowa: val
consensus: val

orf_R8
NRPSPredictor2 SVM: N/A
Stachelhaus code: ser
Minowa: dab
consensus: nrp

orf_R9
NRPSPredictor2 SVM: hydrophilic
Stachelhaus code: arg
Minowa: arg
consensus: arg

Database cross-links

Gene cluster description

Gene Cluster 1. Type = transatpks-nrps-t1pks. Location: 11022 - 132542 nt. Click on genes for more information.
Show pHMM detection rules used
transatpks: ((PKS_KS & ATd) or (ene_KS & ATd) or (mod_KS & ATd) or (hyb_KS & ATd) or (itr_KS & ATd) or (tra_KS & ATd))
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

Homologous subclusters